BackAuthor: Silvestri Ludovico Category: Papers Journals 1) A Guide to Perform 3D Histology of Biological Tissues with Fluorescence Microscopy in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCESBy: Laurino A., Franceschini A., Pesce L., Cinci L., Montalbano A., Mazzamuto G., Sancataldo G., Nesi G., Costantini I., Silvestri L., Pavone FS. Year: 2023 (Cit.: 5 DOI: 10.3390/ijms24076747)
2) Nogo-A antibody delivery through the olfactory mucosa mitigates experimental autoimmune encephalomyelitis in the mouse CNS in CELL DEATH DISCOVERYBy: Pernet V., Joly S., Spiegel S., Meli I., Idriss S., Maigler F., Mdzomba JB., Roenneke AK., Franceschini A., Silvestri L., Pavone FS., Calamai M., Schindowski K., Chan A. Year: 2023 (Cit.: 4 DOI: 10.1038/s41420-023-01588-7)
3) Brain-wide neuron quantification toolkit reveals strong sexual dimorphism in the evolution of fear memory in CELL REPORTSBy: Franceschini A., Mazzamuto G., Checcucci C., Chicchi L., Fanelli D., Costantini I., Passani MB., Silva BA., Pavone FS., Silvestri L. Year: 2023 (Cit.: 2 DOI: 10.1016/j.celrep.2023.112908)
4) A cellular resolution atlas of Broca’s area in SCIENCE ADVANCESBy: Costantini I., Morgan L., Yang JR., Balbastre Y., Varadarajan D., Pesce L., Scardigli M., Mazzamuto G., Gavryusev V., Castelli FM., Roffilli M., Silvestri L., Laffey J., Raia S., Varghese M., Wicinski B., Chang SB., Chen IA., Wang H., Cordero D., Vera M., Nolan J., Nestor K., Mora J., Iglesias JE., Pallares EG., Evancic K., Augustinack JC., Fogarty M., Dalca AV., Frosch MP., Magnain C., Frost R., van der Kouwe A., Chen SC., Boas DA., Pavone FS., Fischl B., Hof PR. Year: 2023 (Cit.: 8 DOI: 10.1126/sciadv.adg3844)
5) 3D molecular phenotyping of cleared human brain tissues with light-sheet fluorescence microscopy in COMMUNICATIONS BIOLOGYBy: Pesce Luca; Scardigli Marina; Gavryusev Vladislav; Laurino Annunziatina; Mazzamuto Giacomo; Brady Niamh; Sancataldo Giuseppe; Silvestri Ludovico; Destrieux Christophe; Hof Patrick R.; Costantini Irene; Pavone Francesco S. Year: 2022 (Cit.: 22 DOI: 10.1038/s42003-022-03390-0)
6) Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy in BIOMEDICAL OPTICS EXPRESSBy: De Vito G., Turrini L., Müllenbroich C., Ricci P., Sancataldo G., Mazzamuto G., Tiso N., Sacconi L., Fanelli D., Silvestri L., Vanzi F., Pavone F.S. Year: 2022 (Cit.: 17 DOI: 10.1364/BOE.434146)
7) KHz-rate volumetric voltage imaging of the whole Zebrafish heart in BIOPHYSICAL REPORTSBy: Sacconi L., Silvestri L., Rodriguez EC., Armstrong GAB., Pavone FS., Shrier A., Bub G. Year: 2022 (Cit.: 14 DOI: 10.1016/j.bpr.2022.100046)
8) Power-effective scanning with AODs for 3D optogenic applications in JOURNAL OF BIOPHOTONICSBy: Ricci P., Marchetti M., Sorelli M., Turrini L., Resta F., Gavryusev V., de Vito G., Sancataldo G., Vanzi F., Silvestri L., Pavone FS. Year: 2022 (Cit.: 5 DOI: 10.1002/jbio.202100256)
9) Autofluorescence enhancement for label‑free imaging of myelinated fibers in mammalian brains in SCIENTIFIC REPORTSBy: Costantini I., Baria E., Sorelli M., Matuschke F., Giardini F., Menzel M., Mazzamuto G., Silvestri L., Cicchi R., Amunts K., Axer M., Pavone F.S. Year: 2021 (Cit.: 19 DOI: 10.1038/s41598-021-86092-7)
10) Comparison of Different Tissue Clearing Methods for Three-Dimensional Reconstruction of Human Brain Cellular Anatomy Using Advanced Imaging Techniques in FRONTIERS IN NEUROANATOMYBy: Scardigli M., Pesce L., Brady N., Mazzamuto G., Gavryusev V., Silvestri L., Hof PR., Destrieux C., Costantini I., Pavone FS. Year: 2021 (Cit.: 10 DOI: 10.3389/fnana.2021.752234)
11) Large-scale, cell-resolution volumetric mapping allows layer-specific investigation of human brain cytoarchitecture in BIOMEDICAL OPTICS EXPRESSBy: Costantini I., Mazzamuto G., Roffilli M., Laurino A., Castelli FM., Neri M., Lughi G., Simonetto A., Lazzeri E., Pesce L., Destrieux C., Silvestri L., Conti V., Guerrini R., Pavone FS Year: 2021 (Cit.: 17 DOI: 10.1364/BOE.415555)
12) Universal autofocus for quantitative volumetric microscopy of whole mouse brains in NATURE METHODSBy: Silvestri L., Mullenbroich MC., Costantini I., Di Giovanna AP., Mazzamuto G., Franceschini A., Kutra D., Kreshuk A., Checcucci C., Toresano LO., Frasconi P., Sacconi L., Pavone FS. Year: 2021 (Cit.: 31 DOI: 10.1038/s41592-021-01208-1)
13) Mesoscopic Optical Imaging of Whole Mouse Heart in JOVE-JOURNAL OF VISUALIZED EXPERIMENTSBy: Giardini F., Lazzeri E., Olianti C., Beconi G., Costantini I., Silvestri L., Cerbai E., Pavone FS., Sacconi L. Year: 2021 (Cit.: 4 DOI: 10.3791/62795)
14) Reconstruction scheme for excitatory and inhibitory dynamics with quenched disorder: application to zebrafish imaging in JOURNAL OF COMPUTATIONAL NEUROSCIENCEBy: Chicchi L., Cecchini G., Adam I., de Vito G., Livi R., Pavone FS., Silvestri L., Turrini L., Vanzi F., Fanelli D. Year: 2021 (Cit.: 5 DOI: 10.1007/s10827-020-00774-1)
15) Inferring network structure and local dynamics from neuronal patterns with quenched disorder in CHAOS SOLITONS & FRACTALSBy: Adam I., Cecchini G., Fanelli D., Kreuz T., Livi R., di Volo M., Mascaro Allegra AL., Conti E., Scaglione A., Silvestri L., Pavone FS. Year: 2020 (Cit.: 6 DOI: 10.1016/j.chaos.2020.110235)
16) Effects of excitation light polarization on fluorescence emission in two-photon light-sheet microscopy in BIOMEDICAL OPTICS EXPRESSBy: de Vito G., Ricci P., Turrini L., Gavryusev V., Mullenbroich C., Tiso N., Vanzi F., Silvestri L., Pavone FS. Year: 2020 (Cit.: 15 DOI: 10.1364/BOE.396388)
17) Fast multi-directional DSLM for confocal detection without striping artifacts in BIOMEDICAL OPTICS EXPRESSBy: Ricci P., Santacaldo G., Gavryusev V., Franceschini A., Mullenbroich MC., Silvestri L., Pavone FS. Year: 2020 (Cit.: 15 DOI: 10.1364/BOE.390916)
18) Dissecting Neuronal Activation on a Brain-Wide Scale With Immediate Early Genes in FRONTIERS IN NEUROSCIENCEBy: Franceschini A., Costantini I., Pavone FS., Silvestri L. Year: 2020 (Cit.: 27 DOI: 10.3389/fnins.2020.569517)
19) Toward a High-Resolution Reconstruction of 3D Nerve Fiber Architectures and Crossings in the Brain Using Light Scattering Measurements and Finite-Difference Time-Domain Simulations in PHYSICAL REVIEW XBy: Menzel M., Axer M., De Raedt H., Costantini I., Silvestri L., Pavone FS., Amunts K., Michielsen K. Year: 2020 (Cit.: 17 DOI: 10.1103/PhysRevX.10.021002)
20) In-vivo and ex-vivo optical clearing methods for biological tissues: review in BIOMEDICAL OPTICS EXPRESSBy: Costantini I., Cicchi R., Silvestri L., Vanzi F., Pavone F.S. Year: 2019 (Cit.: 114 DOI: 10.1364/BOE.10.005251)
21) Tailored Sample Mounting for Light-Sheet Fluorescence Microscopy of Clarified Specimens by Polydimethylsiloxane Casting in FRONTIERS IN NEUROANATOMYBy: Di Giovanna AP., Credi C., Franceschini A., Muellenbroich MC., Silvestri L., Pavone FS. Year: 2019 (Cit.: 8 DOI: 10.3389/fnana.2019.00035)
22) Dual-beam confocal light-sheet microscopy via flexible acousto-optic deflector in JOURNAL OF BIOMEDICAL OPTICSBy: Gavryusev V., Sancataldo G., Ricci P., Montalbano A., Fornetto C., Turrini L., Laurino A., Pesce L., de Vito G., Tiso N., Vanzi F., Silvestri L., Pavone FS. Year: 2019 (Cit.: 23 DOI: 10.1117/1.JBO.24.10.106504)
23) Advanced fluorescence microscopy for in vivo imaging of neuronal activity in OPTICABy: Sancataldo Giuseppe; Silvestri Ludovico; Mascaro Anna Letizia Allegra; Sacconi Leonardo; Pavone Francesco Saverio Year: 2019 (Cit.: 29 DOI: 10.1364/OPTICA.6.000758)
24) Publisher Correction: Whole-Brain Vasculature Reconstruction at the Single Capillary Level (Scientific Reports, (2018), 8, 1, (12573), 10.1038/s41598-018-30533-3) in SCIENTIFIC REPORTSBy: Di Giovanna A.P., Tibo A., Silvestri L., Mullenbroich M.C., Costantini I., Allegra Mascaro A.L., Sacconi L., Frasconi P., Pavone F.S. Year: 2019 (Cit.: 0 DOI: 10.1038/s41598-019-42216-8)
25) Bessel Beam Illumination Reduces Random and Systematic Errors in Quantitative Functional Studies Using Light-Sheet Microscopy (vol 12, 315, 2018) in FRONTIERS IN CELLULAR NEUROSCIENCEBy: Muellenbroich MC., Turrini L., Silvestri L., Alterini T., Gheisari A., Tiso N., Vanzi F., Sacconi L., Pavone FS. Year: 2019 (Cit.: 1 DOI: 10.3389/fncel.2019.00025)
26) Flexible Multi-Beam Light-Sheet Fluorescence Microscope for Live Imaging Without Striping Artifacts in FRONTIERS IN NEUROANATOMYBy: Sancataldo G., Gavryusev V., de Vito G., Turrini L., Locatelli M., Fornetto C., Tiso N., Vanzi F., Silvestri L., Pavone FS.
Year: 2019 (Cit.: 21 DOI: 10.3389/fnana.2019.00007)
27) Reply to Entcheva: The impact of T-tubules on action potential propagation in cardiac tissue in PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCESBy: Scardigli M., Crocini C., Ferrantini C., Gabbrielli T., Silvestri L., Coppini R., Tesi C., Rog-Zielinska E. A., Kohl P., Cerbai E., Poggesi C., Pavone F.S., Sacconi L. Year: 2018 (Cit.: 0 DOI: 10.1073/pnas.1720253115)
28) Confocal multispot microscope for fast and deep imaging in semicleared tissues in JOURNAL OF BIOMEDICAL OPTICSBy: Adam M.P., Muellenbroich M.C., Di Giovanna A.P., Alfieri D., Silvestri L., Sacconi L., Pavone F.S. Year: 2018 (Cit.: 1 DOI: 10.1117/1.JBO.23.2.020503)
29) Whole-Brain Vasculature Reconstruction at the Single Capillary Level in SCIENTIFIC REPORTSBy: Di Giovanna A.P., Tibo A., Silvestri L., Muellenbroich M.C., Costantini I., Allegra Mascaro A.L., Sacconi L., Frasconi P., Pavone F.S. Year: 2018 (Cit.: 85 DOI: 10.1038/s41598-018-30533-3)
30) Bessel Beam Illumination Reduces Random and Systematic Errors in Quantitative Functional Studies Using Light-Sheet Microscopy in FRONTIERS IN CELLULAR NEUROSCIENCEBy: Muellenbroich M. C., Turrini L., Silvestri L., Alterini T., Gheisari A., Vanzi F., Sacconi L., Pavone F. S. Year: 2018 (Cit.: 31 DOI: 10.3389/fncel.2018.00315)
31) High-fidelity imaging in brain-wide structural studies using light-sheet microscopy in ENEUROBy: Müllenbroich M.C., Silvestri L., Di Giovanna A.P., Mazzamuto G., Costantini I., Sacconi L., Pavone F.S. Year: 2018 (Cit.: 13 DOI: 10.1523/ENEURO.0124-18.2018)
32) Quantitative assessment of passive electrical properties of the cardiac T-tubular system by FRAP microscopy in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICABy: Scardigli M., Crocini C., Ferrantini C., Gabbrielli T., Silvestri L., Coppini R., Tesi C., Rog-Zielinska E., Kohl P., Cerbai E., Poggesi C., Pavone F. S., Sacconi L. Year: 2017 (Cit.: 31 DOI: 10.1073/pnas.1702188114)
33) Multi-Modal Optical Imaging of the Cerebellum in Animals in CEREBELLUMBy: Allegra Mascaro A.L., Sacconi L., Silvestri. L., Knott G., Pavone F.S. Year: 2016 (Cit.: 0 DOI: 10.1007/s12311-015-0730-4)
34) Clearing of fixed tissue: a review from a microscopist´s perspective in JOURNAL OF BIOMEDICAL OPTICSBy: Silvestri L., Costantini I., Sacconi L., Pavone F.S. Year: 2016 (Cit.: 104 DOI: 10.1117/1.JBO.21.8.081205)
35) Towards a comprehensive understanding of brain machinery by correlative microscopy in JOURNAL OF BIOMEDICAL OPTICSBy: Allegra Mascaro A. M., Silvestri L., Sacconi L., Pavone F. S. Year: 2015 (Cit.: 11 DOI: 10.1117/1.JBO.20.6.061105)
36) A versatile clearing agent for multi-modal brain imaging in SCIENTIFIC REPORTSBy: Costantini I., Ghobril J.P., Di Giovanna A.P., Allegra Mascaro A. L., Silvestri L., Müllenbroich M.C., Onofri L., Conti V., Vanzi F., Sacconi L., Guerrini R., Markram H., Iannello G., Pavone F.S. Year: 2015 (Cit.: 190 DOI: 10.1038/srep09808)
37) Comprehensive optical and data management infrastructure for high-throughput light-sheet microscopy of whole mouse brains in NEUROPHOTONICSBy: Muellenbroich M.C., Silvestri L., Onofri L., Costantini I., Van’t Hoff M., Sacconi L., Iannello G., Pavone F.S. Year: 2015 (Cit.: 17 DOI: 10.1117/1.NPh.2.4.041404)
38) Quantitative neuroanatomy of all Purkinje cells with light sheet microscopy and high-throughput image analysis in FRONTIERS IN NEUROANATOMYBy: Silvestri L., Paciscopi M., Soda P., Biamonte F., Iannello G., Frasconi P., Pavone F.S. Year: 2015 (Cit.: 31 DOI: 10.3389/fnana.2015.00068)
39) Correlative two-photon and light sheet microscopy in METHODSBy: Silvestri L., Allegra Mascaro A. M., Costantini I., Sacconi L., Pavone F. S. Year: 2014 (Cit.: 26 DOI: 10.1016/j.ymeth.2013.06.013)
40) Correcting Spherical Aberrations in Confocal Light Sheet Microscopy: A Theoretical Study in MICROSCOPY RESEARCH AND TECHNIQUEBy: Silvestri L., Sacconi L., Pavone F.S. Year: 2014 (Cit.: 13 DOI: 10.1002/jemt.22330)
41) Large-scale automated identification of mouse brain cells in confocal light sheet microscopy images in BIOINFORMATICSBy: Frasconi P., Silvestri L., Soda P., Cortini R., Pavone F. S., Iannello G. Year: 2014 (Cit.: 46 DOI: 10.1093/bioinformatics/btu469)
42) Breakthroughs in Photonics 2012: Nonlinear Laser Imaging for Neuroscience in IEEE PHOTONICS JOURNALBy: Allegra Mascaro A. L., Silvestri L., Sacconi L., Pavone F.S. Year: 2013 (Cit.: 2 DOI: 10.1109/JPHOT.2013.2250941)
43) Advanced optical techniques to explore brain structure and function in JOURNAL OF INNOVATIVE OPTICAL HEALTH SCIENCESBy: Silvestri L., Allegra Mascaro A.L., Lotti J., Sacconi L., Pavone F.S. Year: 2013 (Cit.: 20 DOI: 10.1142/S1793545812300029)
44) The connectomics challenge in FUNCTIONAL NEUROLOGYBy: Silvestri L., Sacconi L., Pavone FS. Year: 2013 (Cit.: 13 DOI: 10.11138/FNeur/2013.28.3.167)
45) Micron-scale Resolution Optical Tomography of Entire Mouse Brains with Confocal Light Sheet Microscopy in JOVE-JOURNAL OF VISUALIZED EXPERIMENTSBy: Silvestri L., Bria A., Costantini I., Sacconi L., Peng H., Iannello G., Pavone F.S. Year: 2013 (Cit.: 17 DOI: 10.3791/50696)
46) Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain in OPTICS EXPRESSBy: Silvestri L., Bria A., Sacconi L., Iannello G., Pavone FS. Year: 2012 (Cit.: 188 DOI: 10.1364/OE.20.020582)
47) Event-driven power-law relaxations in weak turbulence in PHYSICAL REVIEW LETTERSBy: Silvestri L., Fronzoni L., Grigolini P., Allegrini P. Year: 2009 (Cit.: 55 DOI: 10.1103/PhysRevLett.102.014502)
48) Experimental Quenching of Harmonic Stimuli: Universality of Linear Response Theory in PHYSICAL REVIEW LETTERSBy: Allegrini P., Bologna M., Fronzoni L., Grigolini P., Silvestri L. Year: 2009 (Cit.: 31 DOI: 10.1103/PhysRevLett.103.030602)