BackAuthor: Mazzamuto Giacomo 1) Optical Clearing and Labeling for Light-sheet Fluorescence Microscopy in Large-scale Human Brain Imaging in JOVE-JOURNAL OF VISUALIZED EXPERIMENTSBy: Di Meo D., Ramazzotti J., Scardigli M., Cheli F., Pesce L., Brady N., Mazzamuto G., Costantini I., Pavone FS. Year: 2024 (Cit.: 0 DOI: 10.3791/65960)
2) Deep learning-based localization algorithms on fluorescence human brain 3D reconstruction: a comparative study using stereology as a reference in SCIENTIFIC REPORTSBy: Checcucci C., Wicinski B., Mazzamuto G., Scardigli M., Ramazzotti J., Brady N., Pavone FS., Hof PR., Costantini I., Frasconi P. Year: 2024 (Cit.: 0 DOI: 10.1038/s41598-024-65092-3)
3) Mapping brain state-dependent sensory responses across the mouse cortex in ISCIENCEBy: Montagni E., Resta F., Tort-Colet N., Scaglione A., Mazzamuto G., Destexhe A., Pavone FS., Mascaro ALA. Year: 2024 (Cit.: 0 DOI: 10.1016/j.isci.2024.109692)
4) Non-self-similar light transport in scattering media in PHYSICAL REVIEW RESEARCHBy: Pini E., Mazzamuto G., Riboli F., Wiersma DS., Pattelli L. Year: 2024 (Cit.: 0 DOI: 10.1103/PhysRevResearch.6.L032026)
5) Segmentation of supragranular and infragranular layers in ultra-high-resolution 7T ex vivo MRI of the human cerebral cortex in CEREBRAL CORTEXBy: Zeng XR., Puonti O., Sayeed A., Herisse R., Mora J., Evancic K., Varadarajan D., Balbastre Y., Costantini I., Scardigli M., Ramazzotti J., Di Meo D., Mazzamuto G., Pesce L., Brady N., Cheli F., Pavone F.S., Hof P.R., Frost R., Augustinack J., Van der Kouwe A., Iglesias J.E., Fischl B. Year: 2024 (Cit.: 0 DOI: 10.1093/cercor/bhae362)
6) Fiber enhancement and 3D orientation analysis in label-free two-photon fluorescence microscopy in SCIENTIFIC REPORTSBy: Sorelli Michele; Costantini Irene; Bocchi Leonardo; Axer Markus; Pavone Francesco Saverio; Mazzamuto Giacomo Year: 2023 (Cit.: 3 DOI: 10.1038/s41598-023-30953-w)
7) A Guide to Perform 3D Histology of Biological Tissues with Fluorescence Microscopy in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCESBy: Laurino A., Franceschini A., Pesce L., Cinci L., Montalbano A., Mazzamuto G., Sancataldo G., Nesi G., Costantini I., Silvestri L., Pavone FS. Year: 2023 (Cit.: 5 DOI: 10.3390/ijms24076747)
8) Brain-wide neuron quantification toolkit reveals strong sexual dimorphism in the evolution of fear memory in CELL REPORTSBy: Franceschini A., Mazzamuto G., Checcucci C., Chicchi L., Fanelli D., Costantini I., Passani MB., Silva BA., Pavone FS., Silvestri L. Year: 2023 (Cit.: 2 DOI: 10.1016/j.celrep.2023.112908)
9) A cellular resolution atlas of Broca’s area in SCIENCE ADVANCESBy: Costantini I., Morgan L., Yang JR., Balbastre Y., Varadarajan D., Pesce L., Scardigli M., Mazzamuto G., Gavryusev V., Castelli FM., Roffilli M., Silvestri L., Laffey J., Raia S., Varghese M., Wicinski B., Chang SB., Chen IA., Wang H., Cordero D., Vera M., Nolan J., Nestor K., Mora J., Iglesias JE., Pallares EG., Evancic K., Augustinack JC., Fogarty M., Dalca AV., Frosch MP., Magnain C., Frost R., van der Kouwe A., Chen SC., Boas DA., Pavone FS., Fischl B., Hof PR. Year: 2023 (Cit.: 8 DOI: 10.1126/sciadv.adg3844)
10) 3D molecular phenotyping of cleared human brain tissues with light-sheet fluorescence microscopy in COMMUNICATIONS BIOLOGYBy: Pesce Luca; Scardigli Marina; Gavryusev Vladislav; Laurino Annunziatina; Mazzamuto Giacomo; Brady Niamh; Sancataldo Giuseppe; Silvestri Ludovico; Destrieux Christophe; Hof Patrick R.; Costantini Irene; Pavone Francesco S. Year: 2022 (Cit.: 22 DOI: 10.1038/s42003-022-03390-0)
11) Experimental imaging and Monte Carlo modeling of ultrafast pulse propagation in thin scattering slabs in JOURNAL OF BIOMEDICAL OPTICSBy: Pattelli L., Mazzamuto G. Year: 2022 (Cit.: 4 DOI: 10.1117/1.JBO.27.8.083020)
12) Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy in BIOMEDICAL OPTICS EXPRESSBy: De Vito G., Turrini L., Müllenbroich C., Ricci P., Sancataldo G., Mazzamuto G., Tiso N., Sacconi L., Fanelli D., Silvestri L., Vanzi F., Pavone F.S. Year: 2022 (Cit.: 17 DOI: 10.1364/BOE.434146)
13) Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data in FRONTIERS IN NEUROSCIENCEBy: Bourget MH., Kamentsky L., Ghosh S., Mazzamuto G., Lazari A., Markiewicz CJ., Oostenveld R., Niso G., Halchenko YO., Lipp I., Takerkart S., Toussaint PJ., Khan AR., Nilsonne G., Castelli FM., Cohen-Adad J. Year: 2022 (Cit.: 11 DOI: 10.3389/fnins.2022.871228)
14) Studying the trafficking of labeled trodusquemine and its application as nerve marker for light-sheet and expansion microscopy in FASEB JOURNALBy: Capitini C., Pesce L., Fani G., Mazzamuto G., Genovese M., Franceschini A., Paoli P., Pieraccini G., Zasloff M., Chiti F., Pavone FS., Calamai M. Year: 2022 (Cit.: 2 DOI: 10.1096/fj.202201276R)
15) Autofluorescence enhancement for label‑free imaging of myelinated fibers in mammalian brains in SCIENTIFIC REPORTSBy: Costantini I., Baria E., Sorelli M., Matuschke F., Giardini F., Menzel M., Mazzamuto G., Silvestri L., Cicchi R., Amunts K., Axer M., Pavone F.S. Year: 2021 (Cit.: 19 DOI: 10.1038/s41598-021-86092-7)
16) Comparison of Different Tissue Clearing Methods for Three-Dimensional Reconstruction of Human Brain Cellular Anatomy Using Advanced Imaging Techniques in FRONTIERS IN NEUROANATOMYBy: Scardigli M., Pesce L., Brady N., Mazzamuto G., Gavryusev V., Silvestri L., Hof PR., Destrieux C., Costantini I., Pavone FS. Year: 2021 (Cit.: 10 DOI: 10.3389/fnana.2021.752234)
17) Large-scale, cell-resolution volumetric mapping allows layer-specific investigation of human brain cytoarchitecture in BIOMEDICAL OPTICS EXPRESSBy: Costantini I., Mazzamuto G., Roffilli M., Laurino A., Castelli FM., Neri M., Lughi G., Simonetto A., Lazzeri E., Pesce L., Destrieux C., Silvestri L., Conti V., Guerrini R., Pavone FS Year: 2021 (Cit.: 17 DOI: 10.1364/BOE.415555)
18) Universal autofocus for quantitative volumetric microscopy of whole mouse brains in NATURE METHODSBy: Silvestri L., Mullenbroich MC., Costantini I., Di Giovanna AP., Mazzamuto G., Franceschini A., Kutra D., Kreshuk A., Checcucci C., Toresano LO., Frasconi P., Sacconi L., Pavone FS. Year: 2021 (Cit.: 31 DOI: 10.1038/s41592-021-01208-1)
19) Deep learning strategies for scalable analysis of high-resolution brain imagery
in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICSBy: Mazzamuto G., Orsini F., Roffilli M., Frasconi P., Pavone F. S., Silvestri S. Year: 2019 (Cit.: 0)
20) Photonic bands, superchirality, and inverse design of a chiral minimal metasurface in NANOPHOTONICSBy: Zanotto S., Mazzamuto G., Riboli F., Biasiol G., La Rocca G. C., Tredicucci A., Pitanti A. Year: 2019 (Cit.: 19 DOI: 10.1515/nanoph-2019-0321)
21) Three-dimensional analysis of human brain cytoarchitectonics by means of a SWITCH/TDE-combined clearing method in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICSBy: Costantini I., Mazzamuto G., Laurino A., Lazzari E., Sacconi L., Neri M., Simonetto A., Ruffilli M., Silvestri L., Pavone FS. Year: 2019 (Cit.: 0)
22) Photostable Molecules on Chip: Integrated Sources of Nonclassical Light in ACS PHOTONICSBy: Lombardi P.; Ovvyan A. P.; Pazzagli S.; Mazzamuto G.; Kewes G.; Neitzke O.; Gruhler N.; Benson O.; Pernice W. H. P.; Cataliotti F. S.; Toninelli C. Year: 2018 (Cit.: 53 DOI: 10.1021/acsphotonics.7b00521)
23) Whole heart cytoarchitecture at sub-cellular resolution in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICSBy: Lazzeri E., Costantini I., Cannazzaro S., Ferrantini C., Mazzamuto G., Crocini C., Cerbai E., Poggesi C., Pavone FS., Sacconi L. Year: 2018 (Cit.: 0)
24) High-fidelity imaging in brain-wide structural studies using light-sheet microscopy in ENEUROBy: Müllenbroich M.C., Silvestri L., Di Giovanna A.P., Mazzamuto G., Costantini I., Sacconi L., Pavone F.S. Year: 2018 (Cit.: 13 DOI: 10.1523/ENEURO.0124-18.2018)
25) Towards a full volumetric atlas of cell-specific neuronal spatial organization in the entire mouse brain in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICSBy: Silvestri L., Di Giovanna A.P., Mazzamuto G., Leergard T., Orsini F., Costantini I., Bjaalie J., Frasconi P., Pavone F.S. Year: 2018 (Cit.: 0)
26) Software tools for efficient processing of high-resolution 3D images of macroscopic brain samples in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICSBy: Mazzamuto G., Silvestri L., Costantini I., Orsini F., Roffilli M., Frasconi P., Sacconi L., Pavone F.S. Year: 2018 (Cit.: 0)
27) 3D human brain digital istopatology in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICSBy: Costantini I., Mazzamuto G., Silvestri L., Neri M., Roffilli M., Conti V., Guerrini R., Sacconi L., Pavone F.S. Year: 2018 (Cit.: 0 DOI: 10.1364/BRAIN.2018.BF4C.1)
28) Automatic Segmentation of Neurons in 3D Samples of Human Brain Cortex in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICSBy: Mazzamuto G., Costantini I., Neri M., Roffilli M., Silvestri L., Pavone F.S. Year: 2018 (Cit.: 0)
29) CELES: CUDA-accelerated simulation of electromagnetic scattering by large ensembles of spheres in JOURNAL OF QUANTITATIVE SPECTROSCOPY & RADIATIVE TRANSFERBy: Egel A., Pattelli L., Mazzamuto G., Wiersma D.S., Lemmer U. Year: 2017 (Cit.: 72 DOI: 10.1016/j.jqsrt.2017.05.010)
30) Photostable molecules on chip: Integrated single photon sources for quantum technologies in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICSBy: Lombardi P., Ovvyan A.P., Pazzagli S., Mazzamuto G., Kewes G., Neitzke O., Gruhler N., Benson O., Pernice W.H.P., Cataliotti F.S., Toninelli C. Year: 2017 (Cit.: 0)
31) Deducing effective light transport parameters in optically thin systems in NEW JOURNAL OF PHYSICSBy: Mazzamuto G., Pattelli L., Toninelli C., Wiersma D. Year: 2016 (Cit.: 12 DOI: 10.1088/1367-2630/18/2/023036)
32) Diffusive light transport in semitransparent media in PHYSICAL REVIEW ABy: Pattelli L., Mazzamuto G., Wiersma D., Toninelli C. Year: 2016 (Cit.: 8 DOI: 10.1103/PhysRevA.94.043846)
33) A realistic fabrication and design concept for quantum gates based on single emitters integrated in plasmonic-dielectric waveguide structures in SCIENTIFIC REPORTSBy: Kewes G., Schoengen M., Neitzke O., Lombardi P., Schönfeld R.S., Mazzamuto G., Schell A.W., Probst J., Wolters J., Löchel B., Toninelli C., Benson O. Year: 2016 (Cit.: 37 DOI: 10.1038/srep28877)
34) Necklace state hallmark in disordered 2D photonic systems in ACS PHOTONICSBy: Sgrignuoli F., Mazzamuto G., Caselli N., Intonti F., Cataliotti FS., Gurioli M., Toninelli C. Year: 2015 (Cit.: 22 DOI: 10.1021/acsphotonics.5b00422)
35) Single-molecule study for a graphene-based nano-position sensor in NEW JOURNAL OF PHYSICSBy: Mazzamuto G., Tabani A., Pazzagli S., Rizvi S., Reserbat-Plantey A., Schädler K., Navickaite G., Gaudreau L., Cataliotti F.S., Koppens F., Toninelli C. Year: 2014 (Cit.: 22 DOI: 10.1088/1367-2630/16/11/113007)
36) Coupling of single DBT molecules to a graphene monolayer: proof of principle for a graphene nanoruler.
in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICSBy: Mazzamuto G., Tabani A., Pazzagli S., Rizvi S., Raserbat-Plantey A., Schaedler K., Navickaite G., Gaudreau L., Cataliotti F., Koppens F., Toninelli C. Year: 2014 (Cit.: 0)