BackAuthor: Silvestri Ludovico 1) 3D molecular phenotyping of cleared human brain tissues with light-sheet fluorescence microscopy in COMMUNICATIONS BIOLOGYBy: Pesce Luca; Scardigli Marina; Gavryusev Vladislav; Laurino Annunziatina; Mazzamuto Giacomo; Brady Niamh; Sancataldo Giuseppe; Silvestri Ludovico; Destrieux Christophe; Hof Patrick R.; Costantini Irene; Pavone Francesco S. Year: 2022 (Cit.: 0 DOI: 10.1038/s42003-022-03390-0)
2) Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy in BIOMEDICAL OPTICS EXPRESSBy: De Vito G., Turrini L., Müllenbroich C., Ricci P., Sancataldo G., Mazzamuto G., Tiso N., Sacconi L., Fanelli D., Silvestri L., Vanzi F., Pavone FS. Year: 2022 (Cit.: 11 DOI: 10.1364/BOE.434146)
3) Autofluorescence enhancement for label‑free imaging of myelinated fibers in mammalian brains in SCIENTIFIC REPORTSBy: Costantini I., Baria E., Sorelli M., Matuschke F., Giardini F., Menzel M., Mazzamuto G., Silvestri L., Cicchi R., Amunts K., Axer M., Pavone F.S. Year: 2021 (Cit.: 17 DOI: 10.1038/s41598-021-86092-7)
4) Comparison of Different Tissue Clearing Methods for Three-Dimensional Reconstruction of Human Brain Cellular Anatomy Using Advanced Imaging Techniques in FRONTIERS IN NEUROANATOMYBy: Scardigli M., Pesce L., Brady N., Mazzamuto G., Gavryusev V., Silvestri L., Hof PR., Destrieux C., Costantini I., Pavone FS. Year: 2021 (Cit.: 0 DOI: 10.3389/fnana.2021.752234)
5) Large-scale, cell-resolution volumetric mapping allows layer-specific investigation of human brain cytoarchitecture in BIOMEDICAL OPTICS EXPRESSBy: Costantini I., Mazzamuto G., Roffilli M., Laurino A., Castelli FM., Neri M., Lughi G., Simonetto A., Lazzeri E., Pesce L., Destrieux C., Silvestri L., Conti V., Guerrini R., Pavone FS Year: 2021 (Cit.: 13 DOI: 10.1364/BOE.415555)
6) Universal autofocus for quantitative volumetric microscopy of whole mouse brains in NATURE METHODSBy: Silvestri L., Mullenbroich MC., Costantini I., Di Giovanna AP., Mazzamuto G., Franceschini A., Kutra D., Kreshuk A., Checcucci C., Toresano LO., Frasconi P., Sacconi L., Pavone FS. Year: 2021 (Cit.: 26 DOI: 10.1038/s41592-021-01208-1)
7) Inferring network structure and local dynamics from neuronal patterns with quenched disorder in CHAOS SOLITONS & FRACTALSBy: Adam I., Cecchini G., Fanelli D., Kreuz T., Livi R., di Volo M., Mascaro Allegra AL., Conti E., Scaglione A., Silvestri L., Pavone FS. Year: 2020 (Cit.: 0 DOI: 10.1016/j.chaos.2020.110235)
8) Effects of excitation light polarization on fluorescence emission in two-photon light-sheet microscopy in BIOMEDICAL OPTICS EXPRESSBy: de Vito G., Ricci P., Turrini L., Gavryusev V., Mullenbroich C., Tiso N., Vanzi F., Silvestri L., Pavone FS. Year: 2020 (Cit.: 13 DOI: 10.1364/BOE.396388)
9) Fast multi-directional DSLM for confocal detection without striping artifacts in BIOMEDICAL OPTICS EXPRESSBy: Ricci P., Santacaldo G., Gavryusev V., Franceschini A., Mullenbroich MC., Silvestri L., Pavone FS. Year: 2020 (Cit.: 13 DOI: 10.1364/BOE.390916)
10) Dissecting Neuronal Activation on a Brain-Wide Scale With Immediate Early Genes in FRONTIERS IN NEUROSCIENCEBy: Franceschini A., Costantini I., Pavone FS., Silvestri L. Year: 2020 (Cit.: 26 DOI: 10.3389/fnins.2020.569517)
11) Toward a High-Resolution Reconstruction of 3D Nerve Fiber Architectures and Crossings in the Brain Using Light Scattering Measurements and Finite-Difference Time-Domain Simulations in PHYSICAL REVIEW XBy: Menzel M., Axer M., De Raedt H., Costantini I., Silvestri L., Pavone FS., Amunts K., Amunts K., Michielsen K. Year: 2020 (Cit.: 17 DOI: 10.1103/PhysRevX.10.021002)
12) Deep learning strategies for scalable analysis of high-resolution brain imagery
By: Mazzamuto G., Orsini F., Roffilli M., Frasconi P., Pavone F. S., Silvestri S. Year: 2019 (Cit.: 0)
13) In-vivo and ex-vivo optical clearing methods for biological tissues: review in BIOMEDICAL OPTICS EXPRESSBy: Costantini I., Cicchi R., Silvestri L., Vanzi F., Pavone F.S. Year: 2019 (Cit.: 107 DOI: 10.1364/BOE.10.005251)
14) Tailored Sample Mounting for Light-Sheet Fluorescence Microscopy of Clarified Specimens by Polydimethylsiloxane Casting in FRONTIERS IN NEUROANATOMYBy: Di Giovanna AP., Credi C., Franceschini A., Muellenbroich MC., Silvestri L., Pavone FS. Year: 2019 (Cit.: 8 DOI: 10.3389/fnana.2019.00035)
15) Dual-beam confocal light-sheet microscopy via flexible acousto-optic deflector in JOURNAL OF BIOMEDICAL OPTICSBy: Gavryusev V., Sancataldo G., Ricci P., Montalbano A., Fornetto C., Turrini L., Laurino A., Pesce L., de Vito G., Tiso N., Vanzi F., Silvestri L., Pavone FS. Year: 2019 (Cit.: 22 DOI: 10.1117/1.JBO.24.10.106504)
16) Advanced fluorescence microscopy for in vivo imaging of neuronal activity in OPTICABy: Sancataldo Giuseppe; Silvestri Ludovico; Mascaro Anna Letizia Allegra; Sacconi Leonardo; Pavone Francesco Saverio Year: 2019 (Cit.: 26 DOI: 10.1364/OPTICA.6.000758)
17) Whole-Brain Vasculature Reconstruction at the Single Capillary Level (vol 8, 12573, 2018) in SCIENTIFIC REPORTSBy: Di Giovanna AP., Tibo A., Silvestri L., Mullenbroich MC., Costantini I., Allegra Mascaro AL., Sacconi L., Frasconi P., Pavone FS. Year: 2019 (Cit.: 0 DOI: 10.1038/s41598-019-42216-8)
18) Bessel Beam Illumination Reduces Random and Systematic Errors in Quantitative Functional Studies Using Light-Sheet Microscopy (vol 12, 315, 2018) in FRONTIERS IN CELLULAR NEUROSCIENCEBy: Muellenbroich MC., Turrini L., Silvestri L., Alterini T., Gheisari A., Tiso N., Vanzi F., Sacconi L., Pavone FS. Year: 2019 (Cit.: 1 DOI: 10.3389/fncel.2019.00025)
19) Flexible Multi-Beam Light-Sheet Fluorescence Microscope for Live Imaging Without Striping Artifacts in FRONTIERS IN NEUROANATOMYBy: Sancataldo G., Gavryusev V., de Vito G., Turrini L., Locatelli M., Fornetto C., Tiso N., Vanzi F., Silvestri L., Pavone FS.
Year: 2019 (Cit.: 20 DOI: 10.3389/fnana.2019.00007)
20) Three-dimensional analysis of human brain cytoarchitectonics by means of a SWITCH/TDE-combined clearing method By: Costantini I., Mazzamuto G., Laurino A., Lazzari E., Sacconi L., Neri M., Simonetto A., Ruffilli M., Silvestri L., Pavone FS. Year: 2019 (Cit.: 0)
21) Reply to Entcheva: The impact of T-tubules on action potential propagation in cardiac tissue in PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCESBy: Scardigli M., Crocini C., Ferrantini C., Gabbrielli T., Silvestri L., Coppini R., Tesi C., Rog-Zielinska E. A., Kohl P., Cerbai E., Poggesi C., Pavone F.S., Sacconi L. Year: 2018 (Cit.: 0 DOI: 10.1073/pnas.1720253115)
22) Confocal multispot microscope for fast and deep imaging in semicleared tissues in JOURNAL OF BIOMEDICAL OPTICSBy: Adam M.P., Muellenbroich M.C., Di Giovanna A.P., Alfieri D., Silvestri L., Sacconi L., Pavone F.S. Year: 2018 (Cit.: 1 DOI: 10.1117/1.JBO.23.2.020503)
23) Whole-Brain Vasculature Reconstruction at the Single Capillary Level in SCIENTIFIC REPORTSBy: Di Giovanna A.P., Tibo A., Silvestri L., Muellenbroich M.C., Costantini I., Allegra Mascaro A.L., Sacconi L., Frasconi P., Pavone F.S. Year: 2018 (Cit.: 77 DOI: 10.1038/s41598-018-30533-3)
24) Bessel Beam Illumination Reduces Random and Systematic Errors in Quantitative Functional Studies Using Light-Sheet Microscopy in FRONTIERS IN CELLULAR NEUROSCIENCEBy: Muellenbroich M. C., Turrini L., Silvestri L., Alterini T., Gheisari A., Vanzi F., Sacconi L., Pavone F. S. Year: 2018 (Cit.: 28 DOI: 10.3389/fncel.2018.00315)
25) High-fidelity imaging in brain-wide structural studies using light-sheet microscopy in ENEUROBy: Müllenbroich M.C., Silvestri L., Di Giovanna A.P., Mazzamuto G., Costantini I., Sacconi L., Pavone F.S. Year: 2018 (Cit.: 11 DOI: 10.1523/ENEURO.0124-18.2018)
26) Towards a full volumetric atlas of cell-specific neuronal spatial organization in the entire mouse brain By: Silvestri L., Di Giovanna A.P., Mazzamuto G., Leergard T., Orsini F., Costantini I., Bjaalie J., Frasconi P., Pavone F.S. Year: 2018 (Cit.: 0)
27) Software tools for efficient processing of high-resolution 3D images of macroscopic brain samples By: Mazzamuto G., Silvestri L., Costantini I., Orsini F., Roffilli M., Frasconi P., Sacconi L., Pavone F.S. Year: 2018 (Cit.: 0)
28) 3D human brain digital istopatology By: Costantini I., Mazzamuto G., Silvestri L., Neri M., Roffilli M., Conti V., Guerrini R., Sacconi L., Pavone F.S. Year: 2018 (Cit.: 0 DOI: 10.1364/BRAIN.2018.BF4C.1)
29) Automatic Segmentation of Neurons in 3D Samples of Human Brain Cortex By: Mazzamuto G., Costantini I., Neri M., Roffilli M., Silvestri L., Pavone F.S. Year: 2018 (Cit.: 0)
30) Quantitative assessment of passive electrical properties of the cardiac T-tubular system by FRAP microscopy in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICABy: Scardigli M., Crocini C., Ferrantini C., Gabbrielli T., Silvestri L., Coppini R., Tesi C., Rog-Zielinska E., Kohl P., Cerbai E., Poggesi C., Pavone F. S., Sacconi L. Year: 2017 (Cit.: 31 DOI: 10.1073/pnas.1702188114)
31) Correlative polarized light imaging and two-photon fluorescence microscopy for 3D myelinated fibers reconstruction By: Costantini I., Menzel M., Silvestri L., Schubert N., Axer M., Amunts K., Pavone F.S. Year: 2017 (Cit.: 0)
32) Fast, image-based autofocus system for high-resolution optical microscopy of whole mouse brains By: Silvestri L., Müllenbroich M.C., Costantini I., Di Giovanna A.P., Sacconi L., Pavone F.S. Year: 2017 (Cit.: 0 DOI: 10.1364/BODA.2017.JTu4A.8)
33) Optimal staining and clearing protocol for whole mouse brain vasculature imaging with light-sheet microscopy By: Di Giovanna A.P., Tibo A., Silvestri L., Muellenbroich M.C., Costantini I., Sacconi L., Frasconi P., Pavone F.S. Year: 2017 (Cit.: 0)
34) High-fidelity imaging with bessel-beam light-sheet microscopy for whole-brain structural and functional studies By: Mu¨llenbroich M.C., Silvestri L., Turrini L., Di Giovanna A.P., Alterini T., Gheisari A., Sacconi L., Vanzi F., Pavone F.S. Year: 2017 (Cit.: 0 DOI: 10.1364/BRAIN.2017.BrW4B.2)
35) High-fidelity functional and structural whole-brain imaging with Bessel-beam light-sheet microscopy By: Mullenbroich MC., Silvestri L., Turrini L., Di Giovanna AP., Alterini T., Gheisari A., Ricci P., Sacconi L., Vanzi F., Pavone FS. Year: 2017 (Cit.: 0)
36) Multi-Modal Optical Imaging of the Cerebellum in Animals in CEREBELLUMBy: Allegra Mascaro A.L., Sacconi L., Silvestri. L., Knott G., Pavone F.S. Year: 2016 (Cit.: 0 DOI: 10.1007/s12311-015-0730-4)
37) Clearing of fixed tissue: a review from a microscopist´s perspective in JOURNAL OF BIOMEDICAL OPTICSBy: Silvestri L., Costantini I., Sacconi L., Pavone F.S. Year: 2016 (Cit.: 103 DOI: 10.1117/1.JBO.21.8.081205)
38) Sistema e metodo di misura della focalizzazione di uno strumento ottico By: Silvestri L., Muellenbroich M.C., Sacconi L., Pavone F.S. Year: 2016 (Cit.: 0)
39) Towards a comprehensive understanding of brain machinery by correlative microscopy in JOURNAL OF BIOMEDICAL OPTICSBy: Allegra Mascaro A. M., Silvestri L., Sacconi L., Pavone F. S. Year: 2015 (Cit.: 11 DOI: 10.1117/1.JBO.20.6.061105)
40) A versatile clearing agent for multi-modal brain imaging in SCIENTIFIC REPORTSBy: Costantini I., Ghobril J.P., Di Giovanna A.P., Allegra Mascaro A. L., Silvestri L., Müllenbroich M.C., Onofri L., Conti V., Vanzi F., Sacconi L., Guerrini R., Markram H., Iannello G., Pavone F.S. Year: 2015 (Cit.: 185 DOI: 10.1038/srep09808)
41) Comprehensive optical and data management infrastructure for high-throughput light-sheet microscopy of whole mouse brains in NEUROPHOTONICSBy: Muellenbroich M.C., Silvestri L., Onofri L., Costantini I., Van’t Hoff M., Sacconi L., Iannello G., Pavone F.S. Year: 2015 (Cit.: 17 DOI: 10.1117/1.NPh.2.4.041404)
42) Quantitative neuroanatomy of all Purkinje cells with light sheet microscopy and high-throughput image analysis in FRONTIERS IN NEUROANATOMYBy: Silvestri L., Paciscopi M., Soda P., Biamonte F., Iannello G., Frasconi P., Pavone F. S. Year: 2015 (Cit.: 30 DOI: 10.3389/fnana.2015.00068)
43) Whole brain optical imaging By: Silvestri L., Allegra Mascaro A.L., Costantini I., Sacconi L., Pavone F.S. Year: 2015 (Cit.: 0 DOI: 10.1117/12.2087339)
44) A multi modal clearing method for brain imaging By: Costantini I., Mascaro A.L.A., Di Giovanna A.P., Silvestri L., Müllenbroich M.C., Sacconi L., Pavone F.S. Year: 2015 (Cit.: 0 DOI: 10.1364/BRAIN.2015.BrM3B.2)
45) A new versatile clearing method for brain imaging By: Costantini I., Di Giovanna A.P., Allegra Mascaro A.L., Silvestri L., Müllenbroich M.C., Sacconi L., Pavone F.S. Year: 2015 (Cit.: 0 DOI: 10.1117/12.2076908)
46) Multiphoton microscopy in brain imaging By: Allegra Mascaro A.L., Silvestri L., Costantini I., Sacconi L., Maco B., Knott G.W., Pavone F.S. Year: 2015 (Cit.: 0 DOI: 10.1117/12.2084183)
47) A versatile new technique to clear mouse and human brain By: Costantini I., Di Giovanna A.P., Mascaro A.L.A., Silvestri L., Müllenbroich M.C., Sacconi L., Pavone F.S. Year: 2015 (Cit.: 0 DOI: 10.1117/12.2184289)
48) Brain-wide charting of neuronal activation maps with cellular resolution By: Silvestri L., Rudinskiy N., Paciscopi M., Müllenbroich M.C., Costantini I., Sacconi L., Frasconi P., Hyman B.T., Pavone F.S. Year: 2015 (Cit.: 0 DOI: 10.1364/BRAIN.2015.BrM3B.6)
49) Brain imaging from the nano- to the macro-scale By: Silvestri L., Allegra Mascaro A.L., Costantini I., Sacconi L., Pavone F.S. Year: 2015 (Cit.: 0 DOI: 10.1109/NER.2015.7146760)
50) Correlative two-photon and light sheet microscopy in METHODSBy: Silvestri L., Allegra Mascaro A. M., Costantini I., Sacconi L., Pavone F. S. Year: 2014 (Cit.: 26 DOI: 10.1016/j.ymeth.2013.06.013)
51) Correcting Spherical Aberrations in Confocal Light Sheet Microscopy: A Theoretical Study in MICROSCOPY RESEARCH AND TECHNIQUEBy: Silvestri L., Sacconi L., Pavone F.S. Year: 2014 (Cit.: 13 DOI: 10.1002/jemt.22330)
52) Large-scale automated identification of mouse brain cells in confocal light sheet microscopy images in BIOINFORMATICSBy: Frasconi P., Silvestri L., Soda P., Cortini R., Pavone F. S., Iannello G. Year: 2014 (Cit.: 45 DOI: 10.1093/bioinformatics/btu469)
53) Exploring the brain on multiple scales with correlative two-photon and light sheet microscopy By: Silvestri L., Allegra Mascaro A.L., Costantini I., Sacconi L., Pavone SF. Year: 2014 (Cit.: 0 DOI: 10.1117/12.2037867)
54) Breakthroughs in Photonics 2012: Nonlinear Laser Imaging for Neuroscience in IEEE PHOTONICS JOURNALBy: Allegra Mascaro A. L., Silvestri L., Sacconi L., Pavone FS. Year: 2013 (Cit.: 2 DOI: 10.1109/JPHOT.2013.2250941)
55) Advanced optical techniques to explore brain structure and function in JOURNAL OF INNOVATIVE OPTICAL HEALTH SCIENCESBy: Silvestri L., Allegra Mascaro A.L., Lotti J., Sacconi L., Pavone FS. Year: 2013 (Cit.: 19 DOI: 10.1142/S1793545812300029)
56) The connectomics challenge in FUNCTIONAL NEUROLOGYBy: Silvestri L., Sacconi L., Pavone FS. Year: 2013 (Cit.: 13 DOI: 10.11138/FNeur/2013.28.3.167)
57) Micron-scale Resolution Optical Tomography of Entire Mouse Brains with Confocal Light Sheet Microscopy in JOVE-JOURNAL OF VISUALIZED EXPERIMENTSBy: Silvestri L., Bria A., Costantini I., Sacconi L., Peng H., Iannello G., Pavone F.S. Year: 2013 (Cit.: 17 DOI: 10.3791/50696)
58) Light sheet microscopy of cleared mouse brains: aberrations effects caused by refractive index mismatch By: Silvestri L., Sacconi L., Pavone FS. Year: 2013 (Cit.: 0 DOI: 10.1117/12.2032488)
59) Neural plasticity explored by correlative two-photon and electron/spim microscopy By: Mascaro A.L.Allegra, Silvestri L., Costantini I., Sacconi L., Maco B., Knott G.W., Pavone F.S. Year: 2013 (Cit.: 0 DOI: 10.1117/12.2032505)
60) Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain in OPTICS EXPRESSBy: Silvestri L., Bria A., Sacconi L., Iannello G., Pavone FS. Year: 2012 (Cit.: 183 DOI: 10.1364/OE.20.020582)
61) Event-driven power-law relaxations in weak turbulence in PHYSICAL REVIEW LETTERSBy: Silvestri L., Fronzoni L., Grigolini P., Allegrini P. Year: 2009 (Cit.: 55 DOI: 10.1103/PhysRevLett.102.014502)
62) Experimental Quenching of Harmonic Stimuli: Universality of Linear Response Theory in PHYSICAL REVIEW LETTERSBy: Allegrini P., Bologna M., Fronzoni L., Grigolini P., Silvestri L. Year: 2009 (Cit.: 31 DOI: 10.1103/PhysRevLett.103.030602)